Journal: PLoS ONE

Article Title: The Genome Sequence of the North-European Cucumber ( Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

doi: 10.1371/journal.pone.0022728

Figure Lengend Snippet: Figure shows chromosomal localization of inversions and translocations between genomic sequences anchored on chromosomes I–VII and a comparison between the B10 and 9930 lines (chromosome numbering is according to the Borszczagowski karyotype (brackets contain Chinese Long karyotype numbering)). a - Chromosome 1 (4), b - Chromosome 2, c – Chromosome 3, d – Chromosome 4 (6), e – Chromosome 5 (1), f – Chromosome 6 (5), g – Chromosome 7. The top panel bar represents B10 chromosome with scaffolds, the bottom bar represents 9930 chromosome with. The lines show chromosomal rearrangements between sequences of two genomes.

Article Snippet: The only aberrance is the Celera/Arachne B10 line assembly supercontigs length (322 Mbp – 88%), though, like it was concluded, it should probably sum up to 247 Mbp (67%).

Techniques: Genomic Sequencing, Comparison

Journal: PLoS ONE

Article Title: The Genome Sequence of the North-European Cucumber ( Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

doi: 10.1371/journal.pone.0022728

Figure Lengend Snippet: Functional differences between cucumber lines B10 (European) and 9930 (Chinese).

Article Snippet: The only aberrance is the Celera/Arachne B10 line assembly supercontigs length (322 Mbp – 88%), though, like it was concluded, it should probably sum up to 247 Mbp (67%).

Techniques: Functional Assay, Gene Expression, Irradiation

Journal: PLoS ONE

Article Title: The Genome Sequence of the North-European Cucumber ( Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

doi: 10.1371/journal.pone.0022728

Figure Lengend Snippet: Relative content of ABREs, DREs and EREs in promoters with CREs in A. thaliana , O. sativa , P. trichocarpa , and C. sativus lines B10 and 9930.

Article Snippet: The only aberrance is the Celera/Arachne B10 line assembly supercontigs length (322 Mbp – 88%), though, like it was concluded, it should probably sum up to 247 Mbp (67%).

Techniques:

Journal: PLoS ONE

Article Title: The Genome Sequence of the North-European Cucumber ( Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

doi: 10.1371/journal.pone.0022728

Figure Lengend Snippet: ( A ) Venn diagrams presenting the number of common and different orthologous genes' groups (5,971) with respect to the occurrences of ABREs, DREs, EREs and their combinations in promoters in A. thaliana , P. trichocarpa , O. sativa and lines B10 and 9930 of northern European and Chinese C. sativus varieties. Total number of orthologous groups with specific CRE or combination of CREs is given in brackets. ( B ) Freezing tolerance tests of non-acclimated A. thaliana and C. sativus plants after ABA treatment. Leaves were frozen in different temperatures and cellular damage was assessed by measuring electrolyte leakage. Statistically significant difference was assessed by Student's t-test – n = 5, * p-Value<0.05; ** p-Value<0.005. Error bars indicate standard deviations. C – control non-treated plants; ABA – abscisic acid treated plants.

Article Snippet: The only aberrance is the Celera/Arachne B10 line assembly supercontigs length (322 Mbp – 88%), though, like it was concluded, it should probably sum up to 247 Mbp (67%).

Techniques: Northern Blot, Control

Journal: PLoS ONE

Article Title: The Genome Sequence of the North-European Cucumber ( Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

doi: 10.1371/journal.pone.0022728

Figure Lengend Snippet: Analysis of the frequency of occurrence of mutations in exons and introns and their promoters with different combinations of CRE in C. sativus lines B10 and 9930.

Article Snippet: The only aberrance is the Celera/Arachne B10 line assembly supercontigs length (322 Mbp – 88%), though, like it was concluded, it should probably sum up to 247 Mbp (67%).

Techniques: